Random Writings and Photos

Random thoughts and/or photos

Posts Tagged ‘research’

Did People Used to Look Older?

Posted by Ó Maolchathaigh on March 4, 2024

Reposting this video because there is actual research on this topic, with answers:


Here’s my take on this, and related thoughts.

This is an excellent look at this phenomenon. One of the things I’ve learned in life is to question everything I am told. I applied this lesson to dreams when I heard, in fact, was told, by well-educated people, that, “We don’t dream in color.” There are many times when I am partially awake while dreaming. Since this question was important to me, I found that I could analyze a dream while I was dreaming, usually in the microseconds before I woke up. I can verify that I have seen colors in dreams. In fact, I have smelled things and tasted things while dreaming.

I don’t remember dreams all that often. One that recurred often, and became part of my more permanent memories, was of flying. I noticed in my early teen years that I was only flying a few feet above the ground. Upon retrospection, I realized that it is probably because my brain is only roughly 5 feet above the ground, and that’s how it feels when I’m walking around, riding a bicycle, or riding in a car. That begs some questions: Do people who live in high rises fly higher in their dreams? Do airline pilots? Do People dream of flying higher who fly small planes, ultralights, or gliders? If, as I’ve read, dreams are our brains’ way of analyzing, categorizing, and storing information, they have to use what information was recorded by our senses. B&W TVs gave our brains the misinformation that moving images are in B&W.

Interestingly enough, my early dreams also seemed to fill my field of vision. Once, I was accidentally overdosed on paregoric, a cough medicine that contained opium, and/or heroin. I woke up in the darkness watching movies play out on my bedroom walls; fighting, full-sized, toy-colored knights in armor, moving up and down hills, that morphed into soldiers attired in either blue or grey uniforms, fighting in hills. This was long before color TV or movies. But I’d seen such colors on toy soldiers.

Nowadays, just before I fall asleep, I notice the little dream-like movies in my head are much smaller, internet-sized videos – social media in size. Looking at the size of videos and photos today, in the mega to giga-byte size, I have theorized, based on much longer upload and download times, that, perhaps our brains cannot hold that much information, so they are minimized thumbnail-like movies. That’s another area of research.

Posted in 2020s, Dreams, movies, opinion, Random Thoughts | Tagged: , , | Leave a Comment »

Contemplating Death Again, With Photos

Posted by Ó Maolchathaigh on September 3, 2019

09/03/19
Well, six years ago I had a heart attack. Too much plaque in the heart artery that feeds the heart muscle itself. Problems for some time before that, something I attributed – as did my doctor – to a recurrence of my childhood asthma. Overtired on exertion, falling way behind on hikes up the mountain. Getting weaker instead of stronger. I’ve climbed up the Sandia-Manzano mountains. Sandia Crest is at 10,679 feet above sea level. Manzano Peak is at 10,098 feet. I’ve climbed in the San Mateo Mountains, specifically to the highest point, up Mt. Taylor, to 11,306 feet, and I’ve snowshoed Mt. Taylor several times. Also climbed to the nearby La Mosca lookout tower at 11,036 ft. I’ve climbed Mount Baldy, at 10,783 feet, in the Magdalena Mountains. I’ve hiked in the Jemez mountains, including snowshoeing in the Valles Caldera. At 11,253 feet in elevation,  the volcanic caldera is 13-miles wide. I’ve hiked and snowshoed often in New Mexico’s mountains.

After the heart attack, not as much. I still hike, usually once a week, sometimes two times a week. Sometimes I hike a fair distance, sometimes I hike really fast for just 70 to 90 minutes, a cardio hike. I figure I’m in good enough shape for my age. My knees never bother me. Since I had the angioplasty and stent placement 6 years ago, I’ve been good. No sign of any heart problems, but you never know.

Of late, I’ve noticed myself falling behind the others I hike with, and being very winded at times, more than usual. I’m sleepy often throughout the day. I used to catnap for 15 or 20 minutes, and be completely refreshed. Often I try that now, and sleep for an hour or two. I have no trouble sleeping through the night.

But, but, but. Today, after I’d taken another short nap, I awoke to a small sharp pain in the chest, just right of center. I researched it, and it’s likely not a heart attack, but it could be leading up to one. Possibly it’s angina, a symptom of heart disease. or it could have been a spasm. Either of those can occur during sleep, and generally last 5 to 15 minutes. This one lasted  two to three hours. Took some Advil and then some aspirin.

The more likely cause is a blood clot traveling to my lungs, as I had none of the heart attack symptoms I’d experienced before, nor any of the other classic symptoms. The reason for this could be that I badly sprained my right ankle a month ago. A lot of blood clotted around it, giving me bruises all around the ankle and even between my toes. I’ve been wearing a stabilizing boot since then. There is also a small (3mm) chip fracture on the talus bone of my ankle. I can walk fine with or without the boot, but the doc gave me two more weeks to keep wearing the boot. I hate it. But, it could be that the ankle injury is the source of a blood clot, if that’s what it was. Painful anyway. The pain is gone now, but it could come back. I don’t know what caused it.

I was supposed to have had a checkup with my cardiologist two weeks ago. Arrived 20 minutes early for a 3:45pm appointment. Checked in and waited. And waited. The few people there all got called in. I waited. More people showed up until there was quite a crowd. There are a lot of doctors there. At 3:45, a tall healthy-looking man checked in, saying he had a 4:00pm appointment with my doctor. He was called shortly. I waited. About 10 minutes later, I got called to the examining room, to have my vital signs read. I told the woman taking them about experiencing weakness, and sleepiness as before my heart attack six years ago. She left, said the doctor would be in shortly.

I sat there, unhappy. The reason I’d come early was hoping to get out by 4:15, as I had an important commitment at 5pm. As I sat, I could hear my doctor’s voice next door, with the man I’d seen come in 20 minutes after me. I waited. But, by 4:30, I had to leave, and I stopped at the reception desk to tell them I was leaving. Never heard back.

Now this sudden pain. I thought about making another appointment, but never got around to it. I could die any time, so I figured I’d get an online will started while I still could. Such a strange thing it is to contemplate a will!

I rent, so I have no property to leave behind. I have only the money in the bank that comes in and goes out every month. I save, but things always come up to spend it on, necessary things, like repairs to my aging car and much older motorcycle. Sometimes I have to travel to family events, and none of them live nearby. Anyway, I have little in the way of tangible assets. But, there are things I’d like to leave to family. I have way too many things, like music CDs and vinyl albums. Tons of books. Some paintings, but mostly prints. A few coins. Not really a whole lot, but I’ve been to enough estate sales to know what happens to all the stuff you think is worth something. It’s all junk, sold cheap. Some things can be worth a goodly amount, but no one knows, unless someone hires a professional appraiser. But few family ever do that, unless the deceased was extremely wealthy. As it happens, I am not. Wealthy. Or deceased, as yet.

But it sure got me thinking about who I could give my things away too. So much of it has little enough financial worth. I thought about who might enjoy this small sculpture, or that old painting, or the coins, or a keepsake from the winery I worked at for eight years before it closed. Some things I’d like to have go to family who would appreciate it. I have too much stuff, sure, and much of it can be sold off at an estate sale for whatever they can get; that’s fine. Sitting here for hours today while the pain subsided, deciding who should get what, and not wanting to slight anyone, but not having so much to give everyone something, even if they actually would want it. 1st world problems. And yet, I’d like family members I love to know I was thinking about them. I like to make people smile, especially those I love. My estate, what a joke. Cheap material goods.

What was my life? Flipping burgers. High school diploma. Working in a college physics lab, measuring x-ray wavelengths and spaces between atoms in silicon crystals, a useful thing to know later on for computer technology. But I left that lab before the computer chip revolution hit. Spent years traveling, working for a carnival, a bronze foundry. Settled down in another state 1,675 miles miles away as the crow flies, but I rode my bicycle there over countless miles. Poured concrete, laid concrete block, installed park benches and steel doors. Treasurer of my union local. Finally got a job back in the sciences, giving tumors to rats, and treating them with chemotherapy drugs and x-rays. I did continue in Cancer Research a bit, then worked Quality Control at a printed circuit board company for three years. Finally went back and got another job at a medical school working first with mice, and their immune system proteins, then with research machines.

I took night school classes for years until I finally got a Bachelors of Arts college degree, a dual major of English (Creative Writing) and Distributed Sciences. I had studied a lot of sciences over the years, but not enough in any one field to get a diploma in it, not even a Bachelors of Science. Never did much with the writing part of my education, but I ended up making synthetic proteins for medical research, and synthetic DNA and RNA as well later on. I could also sequence proteins, or DNA, or analyze the amino acid content of proteins, or purify proteins and DNA. I ran a lab, balanced my budget, kept database records, worked independently. Finally retired with a small pension. Then I made wine for eight years at a small winery until the vintner died, and we had to close the winery. Now I take acting lessons, hike in the mountains, work occasionally as a background actor on movies and TV shows. Still hoping to land a good speaking role, one that brings me recognition, something to show that my life had meaning.

Yeah, I had lovers as I traveled, and met someone I wanted to spend my life with, but all I got was a bit less than two years with her. Married sometime later to a great woman, but after seven years that was over too. Two stepkids I never got to spend time with again. Then I married again. Two more stepkids. That 14-year relationship was fun, but ran out of steam and died. However, I did realize that I loved my stepdaughter when she was diagnosed with a brain tumor. Fortunately we’ve been able to stay connected, even making wine together for those eight years at the winery. She survived after surgery, chemotherapy, radiation and more chemo. How strange to find those chemicals and x-rays I used on rats used successfully on a human being I loved.

So perhaps I did accomplish something significant after all, Perhaps my work on x-rays in silicon and germanium crystals helped create the computers to run those fancy treatment machines. Perhaps the work I did on rats helped establish correct dosages of chemotherapy drugs and x-rays. Perhaps my work helping calibrate x-ray wavelengths helped doctors calculate just how much energy was necessary to kill a tumor and not the person. All the people that work in science, even those that just run the machines, and conduct the experimental protocols contribute, each in our own small way, to a much greater good.

And, goddamnit, my step daughter is alive and healthy. And I love her. I finally learned that love is when you truly care about someone, about their happiness, and not just your own. Love is not about having another person. It’s about loving, without expecting anything in return. That’s what I think. If I’m still alive tomorrow morning, I’m going to call the doctor’s office, get in there as soon as possible, and do what it takes to stay alive. Because I love someone, and I like that feeling.

Just realized I was writing my own obituary. Hmph. Got things to do yet.

(09/05/19 UPDATE: The cardiologist says the pain in my chest is likely muscular, because of the lingering pain, and like a blood clot or angina. Blood pressure, however is high, so I need to monitor it twice a day for two weeks, report back).

Posted in Bicycling, death, family, health, hiking, Life, love, medical, movies, music, My Life, photography, Random Thoughts, rants, wine | Tagged: , , , , , , | Leave a Comment »

A DNA Vignette

Posted by Ó Maolchathaigh on April 2, 2010

The synthesis order from Dr. Jella’s lab was taped to my lab door when I arrived, even though I was early. Science marches on, without regard for working hours.  After flicking on the lights, I dropped my lunch bag on my desk in the rear of the lab, under the sealed windows that let in light, but no air.  I turned my PC on.  I wanted a cup of coffee. I wanted to sit quietly for a few minutes, playing Solitaire.  But, I had unfinished orders from the day before, as well as these new orders.  I’d be lucky to synthesize all of ’em by days end. A long day ahead of me, probably ’till 7:00 pm.
I typed the first sequence into the machine: ACGCCCTATTACGACGAAGTTAC.  I could synthesize four pieces of DNA, or RNA simultaneously.  It would take almost four hours for the DNA Synthesizer to complete four oligonucleotides, then I could start the next four. Hopefully, they would finish in time to let me start another four before I went home. Those would run overnight.
I finished entering all the code letters for all of the syntheses, checked the level of the liquid reagents at every bottle position, and started the Pre Run.  Solenoids clicked on and off as current was applied to each one, moving a magnetic rod back and forth to allow the flow of gas or liquid for each step of the syntheses. Click, click-click, click, click-click, click, click, click, and occasionally the whoosh of gas as regulators adjusted the pressure of ultra high purity nitrogen that pushed all the liquids around.  After all the lines were purged of air and old liquids, and fresh liquid flowed from each reagent through all the lines, I started my first batch of the day.  I was happy that I’d had the machine upgraded from the original two-position one.  I’d never have been able to get this much done so quickly.  
I went for coffee, brought it back and sat idly in front of my PC.  I took a few sips while I stared out the window at a clear blue New Mexico sky, then got to work.  I entered the sequences I was making into my database, so I could keep track of them for billing purposes.  My lab was not directly funded by any grants or stipends.  I had to bill each researcher for the work I did, and then they paid me out of their grants.  It wasn’t a hard job.  The machines did most of my work, synthesizing DNA, or occasionally some RNA.  The RNA was tricky, as it required careful handling and sterile conditions.  There are enzymes that destroy DNA and RNA, but of the two, the RNA enzyme, RNAase, was the worst.  If contaminated with RNAase, the RNA I made would be useless, experiments ruined.  Time and money would be wasted.  I would lose credibility.  I was very careful in my work.
Besides the work synthesizing, I had other jobs: two of which were either synthesizing proteins or sequencing them.  In sequencing, the machine took each protein apart, one amino acid at a time and pumped it past a detector to identify it by its characteristic wavelength.  I didn’t have any orders for protein synthesis today, fortunately, because the process consumed a lot of time, and required constant monitoring. The final step in protein synthesis involved the use of a dangerous, highly corrosive acid in gaseous form: HF, or hydrogen fluoride.  HF is used to etch glass. Due to its insidious nature, it can splash undetected on your skin, and slowly eat its way to the bone. I hated working with HF.  People using it had lost arms, eyes, lungs and some had died.  I had to prepare a super cold bath of dry ice and methanol to cool the gas into liquid form for use.   When I opened the valve on the HF bottle, everything had to be ready: I wore a special apron made of acid resistant material over my lab coat, and wore similar gloves.  I had a special clear shield over my entire face, and the apparatus for using the HF gas was shielded behind a glass-sashed fume hood.  In theory, the gas flowed into my collection vial, liquefied, and cleaved my synthesized protein off of the glass beads it was attached to as part of the synthesis protocol.  Then it flowed through a trap of strong base to neutralize the acid. 
The first time I had tried the procedure, my boss at the time had worked with me. Dr. Latif was from an Arabic family, but had grown up in Trinidad, been educated in England, and had worked for the Mayo Clinic.  He was an interesting guy, full of stories about his parents and Trinidad.  Oddly enough, we were the same age, and liked the same kind of music, rock ‘n’ roll and Motown.  I needed music playing to get me through the day.  In today’s world, an iPod would have sufficed, but in those times, the music came from my radio/tape player and coworkers needed to like the same music for that to work.  Dr. Latif and I were suited up in our protective gear, and we switched on the gas.  All looked well at first.  The gas was cooling into liquid form, and flowing through the simple apparatus.  Suddenly the plastic container of strong base began to implode.  It made no sense.  We had followed all the instructions perfectly, and the pathway of gas was clear.  For some reason, it was back flushing, collapsing the trap.  We couldn’t just shut the gas off, because we feared the trap would either backflush into our protein mixture, or worse, rupture, spreading gas and caustic base all over the place.  Without losing our cool, we increased the pressure of a secondary gas, simple nitrogen that also flowed through to help keep the HF moving.  We opened the exhaust stopcock all the way. Success.  The plastic trap re-inflated.
After the experiment was over, we both let out of sighs of relief.  The danger had been very real.  We laughed too.  We were the only ones who knew the danger.  If the HF gas was released, and even if we’d gotten away safely, that floor of the building would have been in danger. Likely the entire building would have to be evacuated and sealed off.  We’d have needed a HazMat team, police and firemen.  It would have been a mess and created havoc.   We worked out our own procedure after that, and never had any further episodes.

Today, my first four oligonucleotides were finished synthesizing, and I took them off the machine; they would require a minimum of five to eight hours heating to be ready for purification next morning.  I was readying the machine for the next set of orders when Dr. Jella rushed in.  He looked anxious. He wanted to know if his DNA was ready.  I almost laughed.  Even if I had synthesized his orders first, it would still require heating and purification.   I told him that I could put his order ahead of the others I was about to start, and explained the time constraints.  He was so anxious looking that I told him that if it was for a critical experiment, and he needed it right away, I could stay late, even work all night to have it ready for him by morning.  He thought about that for a bit, but shrugged his shoulders, saying, “No, that’s alright. I can wait until tomorrow. It’s not, uh, not for anything real important.”  Turns out it was, but he didn’t want anyone to know what he was working on.
Later, I found out that reporters had been cold-calling various researchers, pumping them for information for a story.   Dr. Jella was working on the newly hot disease: hantavirus. The disease had flu-like symptoms, and people in New Mexico had died within days of showing symptoms of what everyone thought was a cold or flu.  A test for hantavirus was needed as soon as possible.  Researchers were working across the country to develop such a test.  Dr. Jella had the idea of creating a kit, using synthetic fragments of single-stranded hantavirus DNA.  If he had told me what it was for, I’d have gladly worked overnight. As it was, research is a highly competitive business.  Researchers across the country, especially at the Center for Disease Control in Atlanta, GA, where also racing to develop a test. Whoever developed an effective test first would not only get recognition, but would be able to grab new research money to continue their work.  Dr. Jella didn’t want word to get out of the specifics of what he doing.  Someone else could take that information and receive the credit, not to mention future grant money to research other diseases.  Basically, his job and life’s work was on the line.   
I arrived for work an hour early next day, and purified Dr. Jella’s oligos first.  Needless to say, he was at my door soon after.  “Are they ready yet?” he asked, somewhat breathlessly, like he had run up the stairs.  I told him they were synthesized, and purified, but I would need another two hours, at least, to dry them down. A lot of water is used in the purification protocol, and I used a freeze-drying apparatus to evaporate all of the liquid. That made it easy to reconstitute the DNA to the desired concentration for experiments.  He looked very disappointed, but I promised him I’d bring the DNA to his lab as soon as it was ready.
Later, I found out that he was using the DNA I had synthesized for the hantavirus kit. It worked, and his kit is now used to detect hantavirus.  I got a mention in the paper he wrote describing the experiment.*  That was unusual. Most of the work I did went unacknowledged. Sometimes the lab itself was mentioned.  Most of the time, I went about my days synthesizing, sequencing, analyzing, purifying, and running the lab itself, buying materials, and billing the researchers. They paid me.  It was a good living.

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*(Rapid and specific detection of Sin Nombre virus antibodies in patients with hantavirus pulmonary syndrome by a strip immunoblot assay suitable for field diagnosis).

Posted in 2000s, medical, My Life, Uncategorized, Writing | Tagged: , , , , , , , , | 1 Comment »